J3_8UXA_021
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA*UUAGA*UGACA
- Length
- 13 nucleotides
- Bulged bases
- 8UXA|1|AL|A|716
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_021 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.237
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UXA|1|AL|U|696
8UXA|1|AL|G|697
8UXA|1|AL|A|698
*
8UXA|1|AL|U|714
8UXA|1|AL|U|715
8UXA|1|AL|A|716
8UXA|1|AL|G|717
8UXA|1|AL|A|718
*
8UXA|1|AL|U|816
8UXA|1|AL|G|817
8UXA|1|AL|A|818
8UXA|1|AL|C|819
8UXA|1|AL|A|820
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein mS23
- Chain AH
- Small ribosomal subunit protein mS26
- Chain n
- 37S ribosomal protein S8, mitochondrial
- Chain r
- Small ribosomal subunit protein uS12m
- Chain u
- Small ribosomal subunit protein uS15m
- Chain w
- 37S ribosomal protein S17, mitochondrial
Coloring options: