#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3break 4 5 6 7break 8 9 10 11 121-123-45-106-96-117-89-109-11
1 J3_8P9A_0728P9A0.44932sR SSU rRNAU633G634A635*U861A862A865G866*C962A963U964U965A966cWWcWWcWWcWWncSH
2 J3_8CRE_0748CRE0.48442CM SSU rRNAU631G632A633*U846A847A850G851*C947A948U949U950A951cWWcWWntWScWW
3 J3_6CZR_0776CZR0.159511a SSU rRNAC570G571G572*C635U636G638A639*U735G736A737C738G739cWWncWWtWHcWWcWW
4 J3_4LFB_0154LFB0.08771A SSU rRNAC586G587G588*C651U652G654A655*U751G752A753C754G755cWWcWWtWHtHScWWcWW
5 J3_5J7L_0515J7L0.00001AA SSU rRNAC586G587G588*C651U652G654A655*U751G752A753C754G755cWWcWWtWHtHScWWcWWncSH
6 J3_1KUQ_0021KUQ0.10801B16S RIBOSOMAL RNA FRAGMENTC4G5G6*C15U16G18A19*U50G51A52C53G54cWWcWWtWHtHScWWcWWncSH
7 J3_1G1X_0051G1X0.14331D+E16S RIBOSOMAL RNAC586G587G588*C651U652G654A655*U751G752A753C754G755cWWcWWtWHtHScWWcWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CUAGA*UGACG4
UGA*UAAUAG*CAUUA2
CGG*CUUGA*UGACG1
Non-Watson-Crick part of the motif
SequenceCounts
G*UAG*GAC4
G*AAUA*AUU2
G*UUG*GAC1

Release history

Release3.95
Date2025-03-26
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-F-cWW-cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.27 | Max 0.53
    Help

    Coloring options:

    J3_8P9A_072:J3_8P9A_072 = 0J3_8P9A_072:J3_8CRE_074 = 0.149J3_8P9A_072:J3_6CZR_077 = 0.4925J3_8P9A_072:J3_4LFB_015 = 0.5025J3_8P9A_072:J3_5J7L_051 = 0.4493J3_8P9A_072:J3_1KUQ_002 = 0.5034J3_8P9A_072:J3_1G1X_005 = 0.4689J3_8CRE_074:J3_8P9A_072 = 0.149J3_8CRE_074:J3_8CRE_074 = 0J3_8CRE_074:J3_6CZR_077 = 0.4656J3_8CRE_074:J3_4LFB_015 = 0.5293J3_8CRE_074:J3_5J7L_051 = 0.4844J3_8CRE_074:J3_1KUQ_002 = 0.5208J3_8CRE_074:J3_1G1X_005 = 0.4971J3_6CZR_077:J3_8P9A_072 = 0.4925J3_6CZR_077:J3_8CRE_074 = 0.4656J3_6CZR_077:J3_6CZR_077 = 0J3_6CZR_077:J3_4LFB_015 = 0.1235J3_6CZR_077:J3_5J7L_051 = 0.1595J3_6CZR_077:J3_1KUQ_002 = 0.1986J3_6CZR_077:J3_1G1X_005 = 0.2182J3_4LFB_015:J3_8P9A_072 = 0.5025J3_4LFB_015:J3_8CRE_074 = 0.5293J3_4LFB_015:J3_6CZR_077 = 0.1235J3_4LFB_015:J3_4LFB_015 = 0J3_4LFB_015:J3_5J7L_051 = 0.0877J3_4LFB_015:J3_1KUQ_002 = 0.1207J3_4LFB_015:J3_1G1X_005 = 0.1868J3_5J7L_051:J3_8P9A_072 = 0.4493J3_5J7L_051:J3_8CRE_074 = 0.4844J3_5J7L_051:J3_6CZR_077 = 0.1595J3_5J7L_051:J3_4LFB_015 = 0.0877J3_5J7L_051:J3_5J7L_051 = 0J3_5J7L_051:J3_1KUQ_002 = 0.108J3_5J7L_051:J3_1G1X_005 = 0.1433J3_1KUQ_002:J3_8P9A_072 = 0.5034J3_1KUQ_002:J3_8CRE_074 = 0.5208J3_1KUQ_002:J3_6CZR_077 = 0.1986J3_1KUQ_002:J3_4LFB_015 = 0.1207J3_1KUQ_002:J3_5J7L_051 = 0.108J3_1KUQ_002:J3_1KUQ_002 = 0J3_1KUQ_002:J3_1G1X_005 = 0.1953J3_1G1X_005:J3_8P9A_072 = 0.4689J3_1G1X_005:J3_8CRE_074 = 0.4971J3_1G1X_005:J3_6CZR_077 = 0.2182J3_1G1X_005:J3_4LFB_015 = 0.1868J3_1G1X_005:J3_5J7L_051 = 0.1433J3_1G1X_005:J3_1KUQ_002 = 0.1953J3_1G1X_005:J3_1G1X_005 = 0J3_8P9A_072J3_8CRE_074J3_6CZR_077J3_4LFB_015J3_5J7L_051J3_1KUQ_002J3_1G1X_005Discrepancy0.000.100.200.300.400.50
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