J3_8UXA_027

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUG*CAG*CUUAUA

Length

13 nucleotides

Bulged bases

8UXA|1|AL|U|1246

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UXA_027 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.3397

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8UXA|1|AL|U|1055
8UXA|1|AL|U|1056
8UXA|1|AL|U|1057
8UXA|1|AL|G|1058
*
8UXA|1|AL|C|1092
8UXA|1|AL|A|1093
8UXA|1|AL|G|1094
*
8UXA|1|AL|C|1242
8UXA|1|AL|U|1243
8UXA|1|AL|U|1244
8UXA|1|AL|A|1245
8UXA|1|AL|U|1246
8UXA|1|AL|A|1247

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AJ

Small ribosomal subunit protein mS33

Chain t

37S ribosomal protein MRP2, mitochondrial