J3_8UZG_025

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UZG_025 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.1426

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8UZG|1|2|C|936
8UZG|1|2|A|937
8UZG|1|2|A|938
8UZG|1|2|G|939
*
8UZG|1|2|C|1344
8UZG|1|2|U|1345
8UZG|1|2|A|1346
8UZG|1|2|G|1347
8UZG|1|2|U|1348
8UZG|1|2|A|1349
8UZG|1|2|A|1350
*
8UZG|1|2|U|1372
8UZG|1|2|G|1373
8UZG|1|2|A|1374
8UZG|1|2|A|1375
8UZG|1|2|U|1376
8UZG|1|2|A|1377
8UZG|1|2|C|1378
8UZG|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9