J3_8UZG_026

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UZG_026 not in the Motif Atlas

Geometric match to J3_8CRE_079

Geometric discrepancy: 0.1496

The information below is about J3_8CRE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UZG|1|2|U|943
8UZG|1|2|G|944
8UZG|1|2|G|945
8UZG|1|2|A|946
*
8UZG|1|2|U|1235
8UZG|1|2|A|1236
8UZG|1|2|C|1237
*
8UZG|1|2|G|1337
8UZG|1|2|G|1338
8UZG|1|2|A|1339
8UZG|1|2|A|1340

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain n

30S ribosomal protein S9

Chain r

30S ribosomal protein S13