J3_8V03_024

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V03_024 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.1713

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8V03|1|2|C|936
8V03|1|2|A|937
8V03|1|2|A|938
8V03|1|2|G|939
*
8V03|1|2|C|1344
8V03|1|2|U|1345
8V03|1|2|A|1346
8V03|1|2|G|1347
8V03|1|2|U|1348
8V03|1|2|A|1349
8V03|1|2|A|1350
*
8V03|1|2|U|1372
8V03|1|2|G|1373
8V03|1|2|A|1374
8V03|1|2|A|1375
8V03|1|2|U|1376
8V03|1|2|A|1377
8V03|1|2|C|1378
8V03|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

Small ribosomal subunit protein uS9