J3_8V83_004

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V83_004 not in the Motif Atlas

Homologous match to J3_8P9A_065

Geometric discrepancy: 0.3668

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8V83|1|1|C|3298
8V83|1|1|A|3299
8V83|1|1|U|3300
*
8V83|1|1|A|3314
8V83|1|1|G|3315
8V83|1|1|A|3316
8V83|1|1|U|3317
8V83|1|1|G|3318
*
8V83|1|1|C|3388
8V83|1|1|U|3389
8V83|1|1|G|3390

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A