J3_8V83_010

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AGACAUG*UGGG*CAUAAU

Length

17 nucleotides

Bulged bases

8V83|1|1|C|439, 8V83|1|1|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V83|1|1|A|436
8V83|1|1|G|437
8V83|1|1|A|438
8V83|1|1|C|439
8V83|1|1|A|440
8V83|1|1|U|441
8V83|1|1|G|442
*
8V83|1|1|U|492
8V83|1|1|G|493
8V83|1|1|G|494
8V83|1|1|G|495
*
8V83|1|1|C|618
8V83|1|1|A|619
8V83|1|1|U|620
8V83|1|1|A|621
8V83|1|1|A|622
8V83|1|1|U|623

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain R

Protein MAK16

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A

Chain x

Ribosome production factor 1