J3_8V83_012

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CAAAUAUU*AU*AG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V83|1|1|C|1451
8V83|1|1|A|1452
8V83|1|1|A|1453
8V83|1|1|A|1454
8V83|1|1|U|1455
8V83|1|1|A|1456
8V83|1|1|U|1457
8V83|1|1|U|1458
*
8V83|1|1|A|1879
8V83|1|1|U|1880
*
8V83|1|1|A|2352
8V83|1|1|G|2353

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain 8

Ribosomal RNA-processing protein 14

Chain P

60S ribosomal protein L17-A