J3_8V84_006

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUAGCGAACAAGUAC*GGAAAG*CUUG

Length

27 nucleotides

Bulged bases

8V84|1|1|U|343, 8V84|1|1|A|351, 8V84|1|2|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V84_006 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.1156

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8V84|1|1|C|340
8V84|1|1|G|341
8V84|1|1|A|342
8V84|1|1|U|343
8V84|1|1|A|344
8V84|1|1|G|345
8V84|1|1|C|346
8V84|1|1|G|347
8V84|1|1|A|348
8V84|1|1|A|349
8V84|1|1|C|350
8V84|1|1|A|351
8V84|1|1|A|352
8V84|1|1|G|353
8V84|1|1|U|354
8V84|1|1|A|355
8V84|1|1|C|356
*
8V84|1|1|G|363
8V84|1|1|G|364
8V84|1|1|A|365
8V84|1|1|A|366
8V84|1|1|A|367
8V84|1|1|G|368
*
8V84|1|2|C|21
8V84|1|2|U|22
8V84|1|2|U|23
8V84|1|2|G|24

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Chain 2

Saccharomyces cerevisiae 5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A

Chain j

60S ribosomal protein L37-A

Chain v

Nucleolar protein 16

Chain x

Ribosome production factor 1