J3_8V84_008
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8V84|1|1|A|398, 8V84|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V84_008 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1034
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8V84|1|1|A|369
8V84|1|1|U|370
8V84|1|1|G|371
8V84|1|1|A|372
8V84|1|1|A|373
8V84|1|1|A|374
8V84|1|1|A|375
8V84|1|1|G|376
8V84|1|1|A|377
8V84|1|1|A|378
8V84|1|1|C|379
*
8V84|1|1|G|390
8V84|1|1|A|391
8V84|1|1|G|392
8V84|1|1|U|393
8V84|1|1|G|394
8V84|1|1|A|395
8V84|1|1|A|396
8V84|1|1|A|397
8V84|1|1|A|398
8V84|1|1|A|399
8V84|1|1|G|400
8V84|1|1|U|401
8V84|1|1|A|402
8V84|1|1|C|403
8V84|1|1|G|404
*
8V84|1|2|C|19
8V84|1|2|U|20
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
- Chain 2
- Saccharomyces cerevisiae 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- Protein MAK16
- Chain Y
- 60S ribosomal protein L26-A
- Chain x
- Ribosome production factor 1
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