J3_8V87_004

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V87_004 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1608

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8V87|1|1|G|1230
8V87|1|1|A|1231
8V87|1|1|C|1232
*
8V87|1|1|G|1256
8V87|1|1|C|1257
8V87|1|1|U|1258
8V87|1|1|A|1259
8V87|1|1|A|1260
8V87|1|1|G|1261
8V87|1|1|G|1262
*
8V87|1|1|C|1277
8V87|1|1|A|1278
8V87|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain W

Ribosome assembly factor MRT4