J3_8V87_007
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UAUC*GUUGG*CCACUAAUA
- Length
- 18 nucleotides
- Bulged bases
- 8V87|1|1|A|2887, 8V87|1|1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|U|2886
8V87|1|1|A|2887
8V87|1|1|U|2888
8V87|1|1|C|2889
*
8V87|1|1|G|2914
8V87|1|1|U|2915
8V87|1|1|U|2916
8V87|1|1|G|2917
8V87|1|1|G|2918
*
8V87|1|1|C|2928
8V87|1|1|C|2929
8V87|1|1|A|2930
8V87|1|1|C|2931
8V87|1|1|U|2932
8V87|1|1|A|2933
8V87|1|1|A|2934
8V87|1|1|U|2935
8V87|1|1|A|2936
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain O
- Large ribosomal subunit protein uL13A
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain z
- UPF0642 protein YBL028C
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