J3_8V87_012
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V87_012 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.0809
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8V87|1|1|A|369
8V87|1|1|U|370
8V87|1|1|G|371
8V87|1|1|A|372
8V87|1|1|A|373
8V87|1|1|A|374
8V87|1|1|A|375
8V87|1|1|G|376
*
8V87|1|1|C|403
8V87|1|1|G|404
*
8V87|1|2|C|19
8V87|1|2|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
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