J3_8V87_015
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8V87|1|1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V87_015 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0775
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8V87|1|1|U|502
8V87|1|1|C|503
*
8V87|1|1|G|588
8V87|1|1|A|589
8V87|1|1|G|590
8V87|1|1|G|591
8V87|1|1|A|592
8V87|1|1|C|593
8V87|1|1|U|594
8V87|1|1|G|595
8V87|1|1|C|596
8V87|1|1|G|597
*
8V87|1|1|C|606
8V87|1|1|A|607
8V87|1|1|A|608
8V87|1|1|G|609
8V87|1|1|G|610
8V87|1|1|A|611
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain F
- 60S ribosomal protein L7-A
- Chain e
- 60S ribosomal protein L32
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