J3_8V9J_004

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9J_004 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1445

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8V9J|1|A|G|1173
8V9J|1|A|G|1174
8V9J|1|A|A|1175
*
8V9J|1|A|U|1199
8V9J|1|A|U|1200
8V9J|1|A|G|1201
8V9J|1|A|A|1202
8V9J|1|A|A|1203
8V9J|1|A|A|1204
8V9J|1|A|G|1205
*
8V9J|1|A|C|1220
8V9J|1|A|A|1221
8V9J|1|A|C|1222

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11