J3_8V9J_010

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8V9J|1|A|A|2742, 8V9J|1|A|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9J_010 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1064

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8V9J|1|A|C|2741
8V9J|1|A|A|2742
8V9J|1|A|U|2743
8V9J|1|A|C|2744
*
8V9J|1|A|G|2769
8V9J|1|A|U|2770
8V9J|1|A|U|2771
*
8V9J|1|A|A|2785
8V9J|1|A|U|2786
8V9J|1|A|U|2787
8V9J|1|A|A|2788
8V9J|1|A|A|2789
8V9J|1|A|A|2790
8V9J|1|A|G|2791

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14