J3_8V9J_018
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V9J_018 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.1161
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8V9J|1|a|C|1043
8V9J|1|a|G|1044
8V9J|1|a|U|1045
8V9J|1|a|C|1046
8V9J|1|a|A|1047
8V9J|1|a|G|1048
*
8V9J|1|a|C|1087
8V9J|1|a|G|1088
8V9J|1|a|C|1089
8V9J|1|a|A|1090
8V9J|1|a|A|1091
8V9J|1|a|C|1092
8V9J|1|a|C|1093
*
8V9J|1|a|G|1168
8V9J|1|a|A|1169
8V9J|1|a|U|1170
8V9J|1|a|G|1171
8V9J|1|a|A|1172
8V9J|1|a|C|1173
8V9J|1|a|G|1174
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S Ribosomal Protein S2
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S Ribosomal Protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S Ribosomal Protein S14
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