J3_8V9L_008

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0991

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8V9L|1|A|U|2314
8V9L|1|A|U|2315
8V9L|1|A|G|2316
*
8V9L|1|A|C|2419
8V9L|1|A|U|2420
8V9L|1|A|A|2421
8V9L|1|A|A|2422
8V9L|1|A|C|2423
*
8V9L|1|A|G|2447
8V9L|1|A|G|2448
8V9L|1|A|A|2449
8V9L|1|A|C|2450
8V9L|1|A|A|2451
8V9L|1|A|G|2452

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

Large ribosomal subunit protein bL28