J3_8V9L_026

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8V9L|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_026 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1186

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8V9L|1|A|G|378
8V9L|1|A|G|379
8V9L|1|A|A|380
8V9L|1|A|A|381
8V9L|1|A|A|382
*
8V9L|1|A|U|398
8V9L|1|A|G|399
8V9L|1|A|C|400
8V9L|1|A|C|401
8V9L|1|A|G|402
8V9L|1|A|U|403
8V9L|1|A|A|404
8V9L|1|A|G|405
8V9L|1|A|A|406
8V9L|1|A|C|407
*
8V9L|1|A|G|419
8V9L|1|A|G|420
8V9L|1|A|U|421
8V9L|1|A|A|422
8V9L|1|A|C|423

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

50S ribosomal protein L24