J3_8V9L_028

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_028 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2547

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8V9L|1|A|U|1646
8V9L|1|A|G|1647
8V9L|1|A|A|1648
8V9L|1|A|C|1649
8V9L|1|A|G|1650
*
8V9L|1|A|C|1784
8V9L|1|A|C|1785
*
8V9L|1|A|G|1788
8V9L|1|A|A|1789
8V9L|1|A|A|1790
8V9L|1|A|A|1791
8V9L|1|A|A|1792
8V9L|1|A|G|1793

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2