J3_8V9L_036
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V9L_036 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1798
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8V9L|1|a|U|1053
8V9L|1|a|G|1054
*
8V9L|1|a|U|1063
8V9L|1|a|G|1064
8V9L|1|a|U|1065
8V9L|1|a|U|1066
*
8V9L|1|a|G|1079
8V9L|1|a|C|1080
8V9L|1|a|A|1081
8V9L|1|a|A|1082
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- 30S Ribosomal Protein S2
- Chain e
- Small ribosomal subunit protein uS5
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