J3_8VFT_006

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8VFT|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|451
8VFT|1|5|A|452
8VFT|1|5|G|453
8VFT|1|5|U|454
8VFT|1|5|C|455
*
8VFT|1|5|G|701
8VFT|1|5|U|702
8VFT|1|5|G|703
8VFT|1|5|C|704
8VFT|1|5|G|705
*
8VFT|1|5|C|1292
8VFT|1|5|G|1293
8VFT|1|5|A|1294
8VFT|1|5|U|1295
8VFT|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain e

eL32

Chain f

eL33

Chain r

eL28