J3_8VFT_019
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8VFT|1|5|C|4116, 8VFT|1|5|U|4117, 8VFT|1|5|U|4118, 8VFT|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VFT_019 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2865
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VFT|1|5|G|4091
8VFT|1|5|G|4092
8VFT|1|5|G|4093
8VFT|1|5|G|4094
*
8VFT|1|5|C|4114
8VFT|1|5|G|4115
8VFT|1|5|C|4116
8VFT|1|5|U|4117
8VFT|1|5|U|4118
8VFT|1|5|C|4119
8VFT|1|5|U|4120
8VFT|1|5|G|4121
8VFT|1|5|G|4122
8VFT|1|5|C|4123
8VFT|1|5|G|4124
8VFT|1|5|C|4125
8VFT|1|5|C|4126
8VFT|1|5|A|4127
8VFT|1|5|A|4128
8VFT|1|5|G|4129
*
8VFT|1|5|C|4155
8VFT|1|5|G|4156
8VFT|1|5|A|4157
8VFT|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- eL27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: