J3_8VFT_023

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8VFT|1|5|U|4882, 8VFT|1|5|A|4938, 8VFT|1|5|C|4940, 8VFT|1|5|A|4943, 8VFT|1|5|C|4944, 8VFT|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|4749
8VFT|1|5|G|4750
8VFT|1|5|G|4751
8VFT|1|5|U|4752
8VFT|1|5|U|4753
8VFT|1|5|G|4754
*
8VFT|1|5|C|4879
8VFT|1|5|C|4880
8VFT|1|5|U|4881
8VFT|1|5|U|4882
8VFT|1|5|C|4883
*
8VFT|1|5|G|4936
8VFT|1|5|C|4937
8VFT|1|5|A|4938
8VFT|1|5|C|4939
8VFT|1|5|C|4940
8VFT|1|5|G|4941
8VFT|1|5|C|4942
8VFT|1|5|A|4943
8VFT|1|5|C|4944
8VFT|1|5|G|4945
8VFT|1|5|U|4946
8VFT|1|5|U|4947
8VFT|1|5|C|4948
8VFT|1|5|G|4949
8VFT|1|5|U|4950
8VFT|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33