J3_8VFT_024

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

8VFT|1|5|U|4989, 8VFT|1|5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|4970
8VFT|1|5|A|4971
8VFT|1|5|U|4972
8VFT|1|5|U|4973
8VFT|1|5|C|4974
8VFT|1|5|G|4975
*
8VFT|1|5|C|4983
8VFT|1|5|C|4984
8VFT|1|5|U|4985
8VFT|1|5|G|4986
8VFT|1|5|C|4987
8VFT|1|5|U|4988
8VFT|1|5|U|4989
8VFT|1|5|C|4990
8VFT|1|5|U|4991
*
8VFT|1|5|A|5060
8VFT|1|5|A|5061
8VFT|1|5|G|5062
8VFT|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31