J3_8VFT_029

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

U(OMG)GA*UUAAGA*UA

Length

12 nucleotides

Bulged bases

8VFT|1|9|G|921

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|9|U|682
8VFT|1|9|OMG|683
8VFT|1|9|G|684
8VFT|1|9|A|685
*
8VFT|1|9|U|917
8VFT|1|9|U|918
8VFT|1|9|A|919
8VFT|1|9|A|920
8VFT|1|9|G|921
8VFT|1|9|A|922
*
8VFT|1|9|U|1022
8VFT|1|9|A|1023

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

eS7

Chain LL

uS17

Chain NN

uS15

Chain WW

uS8

Chain XX

uS12

Chain bb

eS27