J3_8VFT_031

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_031 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.2711

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VFT|1|9|A|816
8VFT|1|9|G|817
8VFT|1|9|A|818
8VFT|1|9|G|819
*
8VFT|1|9|C|829
8VFT|1|9|A|830
8VFT|1|9|G|831
*
8VFT|1|9|C|843
8VFT|1|9|U|844
8VFT|1|9|G|845
8VFT|1|9|G|846
8VFT|1|9|A|847
8VFT|1|9|U|848

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24