J3_8VFT_036
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8VFT|1|9|G|1256, 8VFT|1|9|A|1258, 8VFT|1|9|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VFT_036 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.091
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VFT|1|9|C|1237
8VFT|1|9|U|1238
8VFT|1|9|U|1239
8VFT|1|9|A|1240
8VFT|1|9|A|1241
8VFT|1|9|U|1242
8VFT|1|9|PSU|1243
8VFT|1|9|U|1244
*
8VFT|1|9|G|1255
8VFT|1|9|G|1256
8VFT|1|9|G|1257
8VFT|1|9|A|1258
8VFT|1|9|A|1259
8VFT|1|9|A|1260
8VFT|1|9|C|1261
8VFT|1|9|C|1262
8VFT|1|9|U|1263
8VFT|1|9|C|1264
8VFT|1|9|A|1265
8VFT|1|9|C|1266
*
8VFT|1|9|G|1516
8VFT|1|9|G|1517
8VFT|1|9|C|1518
8VFT|1|9|U|1519
8VFT|1|9|G|1520
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ff
- eS31
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