J3_8VIO_009

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VIO_009 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1949

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8VIO|1|A|G|1173
8VIO|1|A|G|1174
8VIO|1|A|A|1175
*
8VIO|1|A|U|1199
8VIO|1|A|U|1200
8VIO|1|A|G|1201
8VIO|1|A|A|1202
8VIO|1|A|A|1203
8VIO|1|A|A|1204
8VIO|1|A|G|1205
*
8VIO|1|A|C|1220
8VIO|1|A|A|1221
8VIO|1|A|C|1222

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36