J3_8VIO_011

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VIO|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VIO_011 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1329

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8VIO|1|A|C|1421
8VIO|1|A|A|1422
8VIO|1|A|A|1423
8VIO|1|A|G|1424
*
8VIO|1|A|C|1823
8VIO|1|A|C|1824
8VIO|1|A|C|1825
8VIO|1|A|A|1826
8VIO|1|A|A|1827
8VIO|1|A|A|1828
8VIO|1|A|C|1829
*
8VIO|1|A|G|1838
8VIO|1|A|U|1839
8VIO|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34