J3_8VIO_021

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VIO_021 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.1155

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VIO|1|a|G|50
8VIO|1|a|C|51
*
8VIO|1|a|G|361
8VIO|1|a|G|362
8VIO|1|a|A|363
8VIO|1|a|A|364
8VIO|1|a|U|365
8VIO|1|a|A|366
8VIO|1|a|U|367
*
8VIO|1|a|A|393
8VIO|1|a|G|394
8VIO|1|a|C|395

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain w

30S ribosomal protein S16