J3_8VK7_004

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

8VK7|1|A|U|69, 8VK7|1|A|A|71

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VK7_004 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0935

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|A|53
8VK7|1|A|C|54
*
8VK7|1|A|G|67
8VK7|1|A|A|68
8VK7|1|A|U|69
8VK7|1|A|A|70
8VK7|1|A|A|71
8VK7|1|A|G|72
8VK7|1|A|C|73
*
8VK7|1|A|G|107
8VK7|1|A|A|108
8VK7|1|A|U|109
8VK7|1|A|G|110
8VK7|1|A|U|111

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain Z

50S ribosomal protein L29

Chain d

50S ribosomal protein L34