J3_8VK7_005

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

8VK7|1|A|U|318, 8VK7|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|G|317
8VK7|1|A|U|318
8VK7|1|A|G|319
*
8VK7|1|A|C|457
8VK7|1|A|G|458
8VK7|1|A|A|459
8VK7|1|A|G|460
8VK7|1|A|U|461
8VK7|1|A|A|462
8VK7|1|A|G|463
*
8VK7|1|A|U|487
8VK7|1|A|G|488
8VK7|1|A|A|489
8VK7|1|A|A|490
8VK7|1|A|U|491
8VK7|1|A|C|492

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S Ribosomal Protein L28