J3_8VK7_010

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAGGUUG*CACCCUUGAAAG*CAC

Length

23 nucleotides

Bulged bases

8VK7|1|A|U|1179, 8VK7|1|A|G|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK7|1|A|G|1173
8VK7|1|A|G|1174
8VK7|1|A|A|1175
8VK7|1|A|G|1176
8VK7|1|A|G|1177
8VK7|1|A|U|1178
8VK7|1|A|U|1179
8VK7|1|A|G|1180
*
8VK7|1|A|C|1194
8VK7|1|A|A|1195
8VK7|1|A|C|1196
8VK7|1|A|C|1197
8VK7|1|A|C|1198
8VK7|1|A|U|1199
8VK7|1|A|U|1200
8VK7|1|A|G|1201
8VK7|1|A|A|1202
8VK7|1|A|A|1203
8VK7|1|A|A|1204
8VK7|1|A|G|1205
*
8VK7|1|A|C|1220
8VK7|1|A|A|1221
8VK7|1|A|C|1222

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11