J3_8VK7_015

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VK7_015 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2599

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8VK7|1|A|U|1646
8VK7|1|A|G|1647
8VK7|1|A|A|1648
8VK7|1|A|C|1649
8VK7|1|A|G|1650
*
8VK7|1|A|C|1784
8VK7|1|A|C|1785
*
8VK7|1|A|G|1788
8VK7|1|A|A|1789
8VK7|1|A|A|1790
8VK7|1|A|A|1791
8VK7|1|A|A|1792
8VK7|1|A|G|1793

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2