J3_8VKI_002
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 8VKI|1|A|G|591, 8VKI|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKI_002 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.167
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VKI|1|A|G|27
8VKI|1|A|C|28
*
8VKI|1|A|G|562
8VKI|1|A|U|563
8VKI|1|A|G|564
8VKI|1|A|A|565
8VKI|1|A|A|566
8VKI|1|A|A|567
8VKI|1|A|A|568
8VKI|1|A|G|569
8VKI|1|A|U|570
8VKI|1|A|A|571
8VKI|1|A|C|572
*
8VKI|1|A|G|583
8VKI|1|A|A|584
8VKI|1|A|G|585
8VKI|1|A|U|586
8VKI|1|A|G|587
8VKI|1|A|A|588
8VKI|1|A|A|589
8VKI|1|A|A|590
8VKI|1|A|G|591
8VKI|1|A|A|592
8VKI|1|A|G|593
8VKI|1|A|U|594
8VKI|1|A|A|595
8VKI|1|A|C|596
8VKI|1|A|C|597
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S Ribosomal Protein L20
- Chain T
- 50S Ribosomal Protein L22
- Chain V
- 50S ribosomal protein L24
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