J3_8VKI_007

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8VKI|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKI_007 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1275

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8VKI|1|A|G|378
8VKI|1|A|G|379
8VKI|1|A|A|380
8VKI|1|A|A|381
8VKI|1|A|A|382
*
8VKI|1|A|U|398
8VKI|1|A|G|399
8VKI|1|A|C|400
8VKI|1|A|C|401
8VKI|1|A|G|402
8VKI|1|A|U|403
8VKI|1|A|A|404
8VKI|1|A|G|405
8VKI|1|A|A|406
8VKI|1|A|C|407
*
8VKI|1|A|G|419
8VKI|1|A|G|420
8VKI|1|A|U|421
8VKI|1|A|A|422
8VKI|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S Ribosomal Protein L4

Chain V

50S ribosomal protein L24