J3_8VKI_013

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8VKI|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKI_013 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1292

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8VKI|1|A|U|1459
8VKI|1|A|C|1460
8VKI|1|A|G|1461
8VKI|1|A|G|1462
8VKI|1|A|G|1463
8VKI|1|A|A|1464
8VKI|1|A|C|1465
*
8VKI|1|A|G|1496
8VKI|1|A|A|1497
8VKI|1|A|C|1498
8VKI|1|A|A|1499
8VKI|1|A|A|1500
*
8VKI|1|A|U|1517
8VKI|1|A|A|1518

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23