J3_8VKV_021

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8VKV|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKV_021 not in the Motif Atlas

Geometric match to J3_5J7L_068

Geometric discrepancy: 0.0513

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VKV|1|a|G|297
8VKV|1|a|G|298
8VKV|1|a|A|299
8VKV|1|a|A|300
8VKV|1|a|G|301
*
8VKV|1|a|C|316
8VKV|1|a|G|317
8VKV|1|a|C|318
8VKV|1|a|G|319
8VKV|1|a|A|320
8VKV|1|a|U|321
8VKV|1|a|A|322
8VKV|1|a|C|323
8VKV|1|a|A|324
8VKV|1|a|G|325
*
8VKV|1|a|C|337
8VKV|1|a|G|338
8VKV|1|a|U|339
8VKV|1|a|A|340
8VKV|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4