J3_8VKV_024

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGA*UUUAAAG*CACU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|A|1054
8VKV|1|a|G|1055
8VKV|1|a|G|1056
8VKV|1|a|A|1057
*
8VKV|1|a|U|1081
8VKV|1|a|U|1082
8VKV|1|a|U|1083
8VKV|1|a|A|1084
8VKV|1|a|A|1085
8VKV|1|a|A|1086
8VKV|1|a|G|1087
*
8VKV|1|a|C|1102
8VKV|1|a|A|1103
8VKV|1|a|C|1104
8VKV|1|a|U|1105

Current chains

Chain a

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L10

Chain Y

50S ribosomal protein L11

Chain q

50S ribosomal protein L36