J3_8VKV_034

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8VKV|1|a|U|2833, 8VKV|1|a|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|G|2812
8VKV|1|a|A|2813
8VKV|1|a|A|2814
8VKV|1|a|C|2815
*
8VKV|1|a|G|2831
8VKV|1|a|U|2832
8VKV|1|a|U|2833
8VKV|1|a|G|2834
8VKV|1|a|A|2835
8VKV|1|a|U|2836
*
8VKV|1|a|A|2882
8VKV|1|a|A|2883
8VKV|1|a|U|2884
8VKV|1|a|G|2885
8VKV|1|a|A|2886
8VKV|1|a|A|2887
8VKV|1|a|C|2888

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3

Chain w

50S ribosomal protein L17