J3_8VKW_003
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 8VKW|1|A|U|536
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKW_003 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.2302
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
8VKW|1|A|C|29
8VKW|1|A|U|30
8VKW|1|A|U|31
8VKW|1|A|G|32
*
8VKW|1|A|C|533
8VKW|1|A|G|534
8VKW|1|A|A|535
8VKW|1|A|U|536
8VKW|1|A|A|537
8VKW|1|A|G|538
8VKW|1|A|C|539
8VKW|1|A|G|540
8VKW|1|A|G|541
8VKW|1|A|A|542
8VKW|1|A|U|543
8VKW|1|A|U|544
8VKW|1|A|A|545
8VKW|1|A|G|546
8VKW|1|A|U|547
8VKW|1|A|A|548
8VKW|1|A|C|549
*
8VKW|1|A|G|556
8VKW|1|A|G|557
8VKW|1|A|A|558
8VKW|1|A|A|559
8VKW|1|A|U|560
8VKW|1|A|G|561
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S Ribosomal Protein L4
- Chain R
- 50S Ribosomal Protein L20
- Chain U
- 50S Ribosomal Protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: