J3_8VKW_013

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8VKW|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKW_013 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.1962

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8VKW|1|A|U|1459
8VKW|1|A|C|1460
8VKW|1|A|G|1461
8VKW|1|A|G|1462
8VKW|1|A|G|1463
8VKW|1|A|A|1464
8VKW|1|A|C|1465
*
8VKW|1|A|G|1496
8VKW|1|A|A|1497
8VKW|1|A|C|1498
8VKW|1|A|A|1499
8VKW|1|A|A|1500
*
8VKW|1|A|U|1517
8VKW|1|A|A|1518

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23