J3_8VKW_016

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

8VKW|1|A|A|2421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKW_016 not in the Motif Atlas

Homologous match to J3_9DFE_014

Geometric discrepancy: 0.1197

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8VKW|1|A|U|2314
8VKW|1|A|U|2315
8VKW|1|A|G|2316
*
8VKW|1|A|C|2419
8VKW|1|A|U|2420
8VKW|1|A|A|2421
8VKW|1|A|A|2422
8VKW|1|A|C|2423
*
8VKW|1|A|G|2447
8VKW|1|A|G|2448
8VKW|1|A|A|2449
8VKW|1|A|C|2450
8VKW|1|A|A|2451
8VKW|1|A|G|2452

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Y

50S Ribosomal Protein L28