J3_8VKW_019
3D structure
- PDB id
- 8VKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.44 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8VKW|1|A|A|2742, 8VKW|1|A|U|2743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKW_019 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.1891
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8VKW|1|A|C|2741
8VKW|1|A|A|2742
8VKW|1|A|U|2743
8VKW|1|A|C|2744
*
8VKW|1|A|G|2769
8VKW|1|A|U|2770
8VKW|1|A|U|2771
*
8VKW|1|A|A|2785
8VKW|1|A|U|2786
8VKW|1|A|U|2787
8VKW|1|A|A|2788
8VKW|1|A|A|2789
8VKW|1|A|A|2790
8VKW|1|A|G|2791
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain K
- 50S Ribosomal Protein L13
- Chain L
- 50S ribosomal protein L14
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