J3_8VL1_018

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8VL1|1|a|A|504, 8VL1|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VL1_018 not in the Motif Atlas

Geometric match to J3_5J7L_066

Geometric discrepancy: 0.055

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VL1|1|a|G|30
8VL1|1|a|C|31
*
8VL1|1|a|G|474
8VL1|1|a|C|475
8VL1|1|a|G|476
8VL1|1|a|A|477
8VL1|1|a|A|478
8VL1|1|a|A|479
8VL1|1|a|A|480
8VL1|1|a|G|481
8VL1|1|a|A|482
8VL1|1|a|A|483
8VL1|1|a|C|484
*
8VL1|1|a|G|496
8VL1|1|a|A|497
8VL1|1|a|G|498
8VL1|1|a|U|499
8VL1|1|a|G|500
8VL1|1|a|A|501
8VL1|1|a|A|502
8VL1|1|a|A|503
8VL1|1|a|A|504
8VL1|1|a|A|505
8VL1|1|a|G|506
8VL1|1|a|A|507
8VL1|1|a|A|508
8VL1|1|a|C|509
8VL1|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20