J3_8VOO_018

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8VOO|1|a|A|504, 8VOO|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_018 not in the Motif Atlas

Geometric match to J3_5J7L_066

Geometric discrepancy: 0.055

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VOO|1|a|G|30
8VOO|1|a|C|31
*
8VOO|1|a|G|474
8VOO|1|a|C|475
8VOO|1|a|G|476
8VOO|1|a|A|477
8VOO|1|a|A|478
8VOO|1|a|A|479
8VOO|1|a|A|480
8VOO|1|a|G|481
8VOO|1|a|A|482
8VOO|1|a|A|483
8VOO|1|a|C|484
*
8VOO|1|a|G|496
8VOO|1|a|A|497
8VOO|1|a|G|498
8VOO|1|a|U|499
8VOO|1|a|G|500
8VOO|1|a|A|501
8VOO|1|a|A|502
8VOO|1|a|A|503
8VOO|1|a|A|504
8VOO|1|a|A|505
8VOO|1|a|G|506
8VOO|1|a|A|507
8VOO|1|a|A|508
8VOO|1|a|C|509
8VOO|1|a|C|510

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24

Chain z

50S ribosomal protein L20