J3_8VOP_007

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_007 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.0664

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VOP|1|D|C|936
8VOP|1|D|A|937
8VOP|1|D|A|938
8VOP|1|D|G|939
*
8VOP|1|D|C|1344
8VOP|1|D|U|1345
8VOP|1|D|A|1346
8VOP|1|D|G|1347
8VOP|1|D|U|1348
8VOP|1|D|A|1349
8VOP|1|D|A|1350
*
8VOP|1|D|U|1372
8VOP|1|D|G|1373
8VOP|1|D|A|1374
8VOP|1|D|A|1375
8VOP|1|D|U|1376
8VOP|1|D|A|1377
8VOP|1|D|C|1378
8VOP|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9