J3_8VOP_015
3D structure
- PDB id
- 8VOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8VOP|1|D|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VOP_015 not in the Motif Atlas
- Geometric match to J3_5J7L_054
- Geometric discrepancy: 0.1022
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VOP|1|D|U|1116
8VOP|1|D|A|1117
8VOP|1|D|U|1118
*
8VOP|1|D|A|1155
8VOP|1|D|G|1156
8VOP|1|D|A|1157
8VOP|1|D|C|1158
8VOP|1|D|U|1159
8VOP|1|D|G|1160
8VOP|1|D|C|1161
*
8VOP|1|D|G|1175
8VOP|1|D|A|1176
8VOP|1|D|G|1177
8VOP|1|D|G|1178
8VOP|1|D|A|1179
8VOP|1|D|A|1180
8VOP|1|D|G|1181
8VOP|1|D|G|1182
8VOP|1|D|U|1183
8VOP|1|D|G|1184
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- 30S ribosomal protein S7
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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